Tag: SMaSH

SMaSH 1.0 – A Benchmarking Toolkit for Variant Calling

SMaSH 1.0

:: DESCRIPTION

SMaSH is a benchmarking methodology for evaluating germline variant calling algorithms.

::DEVELOPER

SMaSH team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 SMaSH

:: MORE INFORMATION

Citation:

SMASH: A Benchmarking Toolkit for Human Genome Variant Calling.
Talwalkar A, Liptrap J, Newcomb J, Hartl C, Terhorst J, Curtis K, Bresler M, Song YS, Jordan MI, Patterson D.
Bioinformatics. 2014 Jun 3. pii: btu345.

SMASH – Find and Visualise Genomic Rearrangements

SMASH

:: DESCRIPTION

Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements.

::DEVELOPER

UA.PT Bioinformatics

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

 SMASH

:: MORE INFORMATION

Citation

Diogo Pratas, Raquel M. Silva, Armando J. Pinho, Paulo J. S. G. Ferreira.
An alignment-free method to find and visualise rearrangements between pairs of DNA sequences.
Scientific Reports, 2015 (Accepted).