Tag: Sequence Family

VIRAPOPS 2.1 – Simulates Viral Population from Seed Sequences Family

VIRAPOPS 2.1

:: DESCRIPTION

VIRAPOPS is a forward simulator dedicated to rapidly evolved viral populations.

::DEVELOPER

Michel Petitjean

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsX/ Linux

:: DOWNLOAD

 VIRAPOPS

:: MORE INFORMATION

Citation:

VIRAPOPS2 supports the influenza virus reassortments.
Petitjean M, Vanet A.
Source Code Biol Med. 2014 Aug 17;9:18. doi: 10.1186/1751-0473-9-18

Petitjean M., Vanet A.
VIRAPOPS: a Forward Simulator Dedicated to Rapidly Evolved Viral Populations
Bioinformatics 2014, 30[4], 578-580. DOI 10.1093/bioinformatics/btt724

jpHMM 201503 – Compare a Sequence to a Multiple Alignment of a Sequence Family

jpHMM 201503

:: DESCRIPTION

jpHMM (jumping profile Hidden Markov Model) is a probabilistic approach to compare a sequence to a multiple alignment of a sequence family. The jpHMM web server at GOBICS is a tool for the detection of genomic recombinations in HIV-1 and HBV.

jpHMM Online Version

::DEVELOPER

the Department of Bioinformatics of the University of Göttingen and the Los Alamos HIV Sequence Database Group.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

jpHMM

:: MORE INFORMATION

Citation

A.-K. Schultz, M. Zhang, T. Leitner, C. Kuiken, B. Korber, B. Morgenstern, M. Stanke.
A Jumping Profile Hidden Markov Model and Applications to Recombination Sites in HIV and HCV Genomes.
BMC Bioinformatics 7:265. 2006