Tag: Searching for

GlycoPeptideSearch 1.3.12 – Interpretation of N-glycopeptide by searching for Glycopeptide Results consistent with MS/MS spectra

GlycoPeptideSearch 1.3.12

:: DESCRIPTION

GlycoPeptideSearch (or GPS) is a siimplifies data interpretation of N-glycopeptide CID MS/MS datasets by searching for glycopeptide results consistent with MS/MS spectra. Results are tabulated in Excel format.

::DEVELOPER

Edwards Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 GlycoPeptideSearch

:: MORE INFORMATION

Citation

J Proteome Res. 2012 Mar 2;11(3):1728-40. doi: 10.1021/pr201183w. Epub 2012 Feb 6.
Semi-automated identification of N-Glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search.
Pompach P, Chandler KB, Lan R, Edwards N, Goldman R.

TRANSPO – Searching for Transposons with known TIR

TRANSPO

:: DESCRIPTION

TRANSPO searchs transposons of Class II which are characterized by the existence of terminal inverted repeats, denoted TIR’s, that flank the transposons. Then, given the TIR, the program finds all locations at which the direct and inverse TIR approximate matches the DNA sequence and whose distance lies within a given range. Finally TRANSPO returns the following five sequences: Left Target – Left Tir – transposon – Right TIR – Right Target

::DEVELOPER

N. Santiago and Dr. J.M. Casacuberta of the CID (CSIC) and C. Herraiz, R. Goñi and Dr. X. Messeguer of the LSI (UPC).

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Web Browser

:: DOWNLOAD

 TRANSPO

:: MORE INFORMATION