Scallop v0.10.4

:: DESCRIPTION

Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and paired-end reads, while also achieves both transcripts parsimony and coverage deviation minimization.

::DEVELOPER

Kingsford Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / MacOs
• Boost

:: DOWNLOAD

Scallop

:: MORE INFORMATION

Citation

Nat Biotechnol. 2017 Dec;35(12):1167-1169. doi: 10.1038/nbt.4020.
Accurate assembly of transcripts through phase-preserving graph decomposition.
Shao M, Kingsford C.