SAT 1.2 – Sequence Alignment Teacher

SAT 1.2

:: DESCRIPTION

SAT is a software to teach about sequence alignment methods based on dynamic programming such as Smith – Waterman (Local) and Needleman – Wunsch (Global).

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

:: REQUIREMENTS

Linux/ Windows/ MacOsX
Java

:: DOWNLOAD

SAT

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Jul 1;26(13):1664-5. doi: 10.1093/bioinformatics/btq252. Epub 2010 May 14.
Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming.
Ibarra IL1, Melo F.

SATlotyper 0.1.5 – Haplotype Inference from unphased SNP data in Heterozygous Polyploids based on SAT

SATlotyper 0.1.5

:: DESCRIPTION

SATlotyper is a software tool designed for inferring haplotypes from polyploid and polyallelic unphased SNP data.

::DEVELOPER

Max Planck Institute for Molecular Plant Physiology

:: SCREENSHOTS

:: REQUIREMENTS

Linux/MacOsX/Windows
Java

:: DOWNLOAD

SATlotyper

:: MORE INFORMATION

Citation

Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
Neigenfind J, Gyetvai G, Basekow R, Diehl S, Achenbach U, Gebhardt C, Selbig J, Kersten B.
BMC Genomics. 2008 Jul 30;9:356.