Tag: rTASSEL

TASSEL 5.0 / rTASSEL 0.9.23 – Association And Diversity Analyses In Plants And Animals

TASSEL 5.0 / rTASSEL 0.9.23

:: DESCRIPTION

TASSEL (Trait Analysis by aSSociation, Evolution, and Linkage) is a software package which performs a variety of genetic analyses. The analyses include association mapping, diversity estimation and calculating linkage disequilibrium. The association analysis between genotypes and phenotypes can be performed by either a general linear model or a mixed linear model. The general linear model now allows users to analyze complex field designs, environmental interactions, and epistatic interactions. The mixed model is specially designed to handle polygenic effects at multiple levels of relatedness including pedigree information.

rTASSEL  construct an R-based front-end to connect to a variety of highly used TASSEL methods and analytical tools.

::DEVELOPER

The Buckler Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • Java

    • / R

:: DOWNLOAD

 TASSEL / rTASSEL

:: MORE INFORMATION

Citation

Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. (2007)
TASSEL: Software for association mapping of complex traits in diverse samples.
Bioinformatics 23:2633-2635.