Tag: Repetitive Element

AgIn 0.9 – Measuring the landscape of CpG methylation of individual Repetitive Elements

AgIn 0.9

:: DESCRIPTION

AgIn (Aggregate on Intervals) processes SMRT sequencing kinetic summary to predict regional methylation on large genome.

::DEVELOPER

Morishita Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

AgIn

:: MORE INFORMATION

Citation

Suzuki Y, Korlach J, Turner SW, Tsukahara T, Taniguchi J, Qu W, Ichikawa K, Yoshimura J, Yurino H, Takahashi Y, Mitsui J, Ishiura H, Tsuji S, Takeda H, Morishita S.
AgIn: measuring the landscape of CpG methylation of individual repetitive elements.
Bioinformatics. 2016 Oct 1;32(19):2911-9. doi: 10.1093/bioinformatics/btw360. Epub 2016 Jun 17. PMID: 27318202; PMCID: PMC5039925.

SubSeqer – Detection and Identification of Repetitive Elements in low-complexity Sequences

SubSeqer

:: DESCRIPTION

SubSeqer is a web-tool which uses graphical visualization methods borrowed from protein interaction studies to identify and characterize repetitive elements in low-complexity sequences.

::DEVELOPER

Parkinson lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Bioinformatics. 2008 Apr 1;24(7):1016-7. doi: 10.1093/bioinformatics/btn073. Epub 2008 Feb 26.
SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences.
He D, Parkinson J.