AlienTrimmer 2.1 – Detecting and Removing Contaminant Sequences in both ends of NGSread sequence

AlienTrimmer 2.1

:: DESCRIPTION

AlienTrimmer is a software that allows detecting and removing contaminant sequences in both ends of NGSread sequences FASTA/FASTQ formated.

::DEVELOPER

Alexis Criscuolo (alexis.criscuolo@pasteur.fr)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

  AlienTrimmer

:: MORE INFORMATION

Citation

Genomics. 2013 Aug 1. pii: S0888-7543(13)00148-1. doi: 10.1016/j.ygeno.2013.07.011.
AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.
Criscuolo A, Brisse S.

DeStripe 2 – Removing stripe noise in AFM images

DeStripe 2

:: DESCRIPTION

DeStripe uses a denoising protocol for the AFM(Atomic force microscopy) images that are contaminated with heavy stripes.

::DEVELOPER

BIODEV

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 DeStripe

:: MORE INFORMATION

Citation

Chen S-wW and Pellequer JL. (2011)
DeStripe: frequency-based algorithm for removing stripe noises from AFM images.
BMC Struct. Biol. 11: 7.