Tag: Redundancy

Vindel 20150218 – A Simple Pipeline for Checking Indel Redundancy

Vindel 20150218

:: DESCRIPTION

Vindel, a simple yet effective computational pipeline, can be used to check whether a given set of indels are redundant with respect to those already in the database of interest such as NCBI’s dbSNP.

::DEVELOPER

Professor Zhang Liqing’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Vindel

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Nov 19;15(1):359. [Epub ahead of print]
Vindel: a simple pipeline for checking indel redundancy.
Li Z, Wu X, He B, Zhang L.

Chimera – Exploiting Hidden Information Interleaved in the Redundancy of the Genetic Code

Chimera

:: DESCRIPTION

Chimera is an unsupervised computationally efficient approach for exploiting hidden high dimensional information related to the way gene expression is encoded in the ORF, based solely on the genome of the analysed organism.

::DEVELOPER

Tamir Tuller’s Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • MatLab

:: DOWNLOAD

 Chimera

:: MORE INFORMATION

Citation

Exploiting Hidden Information Interleaved in the Redundancy of the Genetic Code without Prior Knowledge.
Zur H, Tuller T.
Bioinformatics. 2014 Nov 29. pii: btu797.