RNAssess – Quality Assessment of RNA 3D Structures

RNAssess

:: DESCRIPTION

RNAssess is a computational server for comparison of RNA 3D models with the reference structure and for discrimination between the correct and incorrect models.

::DEVELOPER

The Bioinformatics Group, Poznan University of Technology.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

RNAssess-a web server for quality assessment of RNA 3D structures.
Lukasiak P, Antczak M, Ratajczak T, Szachniuk M, Popenda M, Adamiak RW, Blazewicz J.
Nucleic Acids Res. 2015 Jun 11. pii: gkv557.

ModelEvaluator 1.0 – Quality Assessment of a Single Model

ModelEvaluator 1.0

:: DESCRIPTION

ModelEvaluator is a program to evaluate the quality of a single protein model using support vector machines and 1D and 2D structural features

::DEVELOPER

Dr. Jianlin Cheng

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

ModelEvaluator

:: MORE INFORMATION

Citation

Z. Wang, A.N. Tegge and J. Cheng.
Evaluating the Absolute Quality of a Single Protein Model Using Support Vector Machines and Structural Features.
Proteins,vol. 75, no. 3, 638-647, 2009.

QCS – Quality Control Score For Quality Assessment of Protein Structure Prediction

QCS

:: DESCRIPTION

QCS (Quality Control Score) is a new method to evaluate the quality of structure predictions, especially for template free structure prediction. It was developed to mimic visual inspction by human expert and it captures both global and local structural features, with emphasis on global topology.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
GCC
Python

:: DOWNLOAD

QCS

:: MORE INFORMATION

Citation

Cong Q, Kinch LN, Pei J, Shi S, Grishin VN, Li W, Grishin NV.
An automatic method for CASP9 free modeling structure prediction assessment.
Bioinformatics. 2011 Dec 15;27(24):3371-8. Epub 2011 Oct 12.

Kalign 2.03 / Kalignvu 2.1 / Mumsa 1.0 – Multiple Sequence Alignment , Viewer & Quality Assessment

Kalign 2.03 / Kalignvu 2.1 / Mumsa 1.0

:: DESCRIPTION

Kalign is a fast and accurate multiple sequence alignment software.

Kalignvu is an lightweight viewer for multiple sequence alignments and phylogenetic trees.

Mumsa is a program to assess the quality of multiple sequence alignments.

::DEVELOPER

Dr. Erik Sonnhammer

:: SCREENSHOTS

:: REQUIREMENTS

Linux

:: DOWNLOAD

Kalign ; Kalignvu / Mumsa

:: MORE INFORMATION

Citation:

Kalign – an accurate and fast multiple sequence alignment algorithm.
Lassmann T. and Erik L.L. Sonnhammer (2005)
BMC Bioinformatics, 6:298

Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T. and Erik L.L. Sonnhammer (2006)
Nucleic Acids Research, 34:W596-W599