EasyFRAP – Quantitative and Qualitative Analysis of FRAP data

EasyFRAP

:: DESCRIPTION

EasyFRAP assists quantitative and qualitative analysis of FRAP data.The user can handle simultaneously large datasets of raw data, visualize fluorescence recovery curves, exclude low quality data, perform data normalization, extract quantitative parameters, perform batch analysis and save the resulting data and figures for further analysis.

::DEVELOPER

the Cell Cycle Laboratory at the School of Medicine, University of Patras.

:: SCREENSHOTS

EasyFRAP

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • MatLab

:: DOWNLOAD

 EasyFRAP

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jul 1;28(13):1800-1. doi: 10.1093/bioinformatics/bts241. Epub 2012 Apr 27.
easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data.
Rapsomaniki MA1, Kotsantis P, Symeonidou IE, Giakoumakis NN, Taraviras S, Lygerou Z.

DensiTree 2.2.3 – Qualitative Analysis of Sets of Trees

DensiTree 2.2.3

:: DESCRIPTION

DensiTree is a program for qualitative analysis of sets of trees that make it possible to visually inspect the posterior distribution of an MCMC run over a tree. Many features of the posterior distribution are easily visible, such as agreement/disagreement of tree topologies, uncertainty in node heights and relative dominance of particular topologies.

::DEVELOPER

Remco Bouckaert

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

DensiTree

:: MORE INFORMATION

Citation

Remco R. Bouckaert.
DensiTree: Making Sense of Sets of Phylogenetic Trees.
Bioinformatics 2010; doi: 10.1093/bioinformatics/btq110

GINsim 3.0.0b – Qualitative Analysis of Regulatory Graphs

GINsim 3.0.0b

:: DESCRIPTION

GINsim (Gene Interaction Network simulation) is a computer tool for the modeling and simulation of genetic regulatory networks.

::DEVELOPER

GINsim Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux  / WIndows / MacOsX
  • Java

:: DOWNLOAD

 GINsim

:: MORE INFORMATION

Citation:

A.G. Gonzalez, A. Naldi, L. Sánchez, D.Thieffry, C. Chaouiya .
GINsim : a software suite for the qualitative modelling, simulation and analysis of regulatory networks.
Biosystems (2006), 84(2):91-100