PyroMap – Maps Pyrosequencing Reads onto Reference Sequences

PyroMap

:: DESCRIPTION

PyroMap accurately maps pyrosequencing reads onto reference sequences using a selectively weighted Smith-Waterman (SW^2) algorithm to incorporate quality scores into alignment.

::DEVELOPER

Stanford HIVDB Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python

:: DOWNLOAD

 PyroMap

:: MORE INFORMATION

KEC 20121128 – Error Correction for Pyrosequencing Reads

KEC 20121128

:: DESCRIPTION

KEC is a software for error threshold finding based on fitting of Poisson distribution to k-counts distribution was added.

::DEVELOPER

Georgia State University NGS Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java

:: DOWNLOAD

 KEC

:: MORE INFORMATION

Citation

P. Skums, Z. Dimitrova, D. S. Campo, G. Vaughan, L. Rossi, J. C. Forbi, J. Yokosawa, A. Zelikovsky, Y. Khudyakov,
Efficient error correction for next-generation sequencing of viral amplicons,
BMC Bioinformatics 13 (Suppl10): S6 2012