Tag: pruning

degPrune 1.0 – Density based Pruning for Identification of Differentially Expressed Genes

degPrune 1.0

:: DESCRIPTION

degPrune is a program for pruning most non-differentially expressed genes from microarray data in PCL or NCBI GEO format

::DEVELOPER

Machine Learning and Evolution Laboratory (MLEG)

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • Java
:: DOWNLOAD

 degPrune

:: MORE INFORMATION

Citation:

BMC Genomics. 2010 Nov 2;11 Suppl 2:S3. doi: 10.1186/1471-2164-11-S2-S3.
Density based pruning for identification of differentially expressed genes from microarray data.
Hu J1, Xu J.

PhyloTreePruner – A Nifty Java program for Pruning Phylogenetic Trees

PhyloTreePruner

:: DESCRIPTION

PhyloTreePruner is a utility that uses a phylogenetic approach to refine orthology inferences made by graph-based (or other) methods.

::DEVELOPER

Halanych Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/Windows
  • Java

:: DOWNLOAD

 PhyloTreePruner

:: MORE INFORMATION

Citation

Evol Bioinform Online. 2013 Oct 29;9:429-35. doi: 10.4137/EBO.S12813. eCollection 2013.
PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics.
Kocot KM1, Citarella MR, Moroz LL, Halanych KM.