PresCont – Predicting Protein-protein Interfaces

PresCont

:: DESCRIPTION

PresCont is a web service which predicts in a robust manner amino acids that constitute protein-protein interfaces (PPIs)

::DEVELOPER

Computational Protein Design and Evolution at the University of Regensburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Proteins. 2012 Jan;80(1):154-68. doi: 10.1002/prot.23172.
PresCont: predicting protein-protein interfaces utilizing four residue properties.
Zellner H, Staudigel M, Trenner T, Bittkowski M, Wolowski V, Icking C, Merkl R.

SPPIDER – Solvent accessibility based Protein-Protein Interface iDEntification and Recognition

SPPIDER

:: DESCRIPTION

The SPPIDER protein interface recognition server can be used to: (1) predict residues to be at the putative protein interface(s) by considering single protein chain with resolved 3D structure; (2) analyse protein-protein complex with given 3D structural information and identify residues that are being in interchain contact.

::DEVELOPER

Meller Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Proteins. 2007 Feb 15;66(3):630-45.
Prediction-based fingerprints of protein-protein interactions.
Porollo A1, Meller J.

EPPIC 3.3.3 – Evolutionary Protein-Protein Interface Classifier

EPPIC 3.3.3

:: DESCRIPTION

EPPIC aims at classifying the interfaces present in protein crystal structures in order to determine whether they are biologically relevant or not.

::DEVELOPER

EPPIC team

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Linux / MacOsX
Java

:: DOWNLOAD

EPPIC

:: MORE INFORMATION

Citation

Protein interface classification by evolutionary analysis.
Duarte JM, Srebniak A, Schärer MA, Capitani G.
BMC Bioinformatics. 2012 Dec 22;13:334. doi: 10.1186/1471-2105-13-334.

PrISE 20110723 – Prediction of protein-protein Interface residues using Structural Elements

PrISE 20110723

:: DESCRIPTION

PrISE predict interface residues using local surface structural similarity. PrISe represents a local surface structure using structural elements.

::DEVELOPER

Artificial Intelligence Research Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2012 Mar 18;13:41. doi: 10.1186/1471-2105-13-41.
Predicting protein-protein interface residues using local surface structural similarity.
Jordan RA1, El-Manzalawy Y, Dobbs D, Honavar V.

Galinter 1.6 – Compare Protein-protein Interfaces

Galinter 1.6

:: DESCRIPTION

Galinter (Graph-based alignment of protein-protein interfaces) is a program for aligning non-covalent interactions at protein-protein interfaces. The method matches non-covalent interactions between different interfaces. The vector representations of van der Waals interactions and hydrogen bonds are aligned based on their geometry.

::DEVELOPER

Hongbo Zhu, Max-Planck-Institut Informatik

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

Galinter

:: MORE INFORMATION

Citation:

Zhu H, Sommer I, Lengauer T, Domingues FS.
Alignment of Non-Covalent Interactions at Protein-Protein Interfaces.
PLoS ONE. 2008; 3(4): e1926.