:: DESCRIPTION
PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PISA structure databases.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2005 May 1;21(9):1901-7. Epub 2005 Jan 18.
PIBASE: a comprehensive database of structurally defined protein interfaces.
Davis FP1, Sali A.
:: DESCRIPTION
jsPISA is an interactive web tool for the calculation of macromolecular surfaces and interfaces, assessment of their properties and inference on probable macromolecular assemblies (complexes) from coordinate data, typically delivered by crystallographic X-ray experiment.
:: DEVELOPER
Eugene Krissinel ( eugene.krissinel@stfc.ac.uk.)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2015 Apr 23. pii: gkv314.
Stock-based detection of protein oligomeric states in jsPISA.
Krissinel E
:: DESCRIPTION
JET (Joint Evolutionary Trees) is a method designed to detect very different types of interactions of a protein with another protein, ligands, DNA, and RNA. It uses carefully designed sampling method, making sequence analysis more sensitive to the functional and structural importance of individual residues, and a clustering method parametrized on the target structure for the detection of patches on protein surfaces and their extension into predicted interaction sites.
::DEVELOPER
Laboratory of Computational and Quantitative Biology(LCQB)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.
Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling,
PLoS Comput Biol, 5(1):e1000267, 2009.
:: DESCRIPTION
PCRPi-W is a web server to chart hot spots in protein structures.
::DEVELOPER
Bioinformatics Lab :: IBERS :: Aberystwyth University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
PLoS One. 2010 Aug 23;5(8):e12352. doi: 10.1371/journal.pone.0012352.
Presaging critical residues in protein interfaces-web server (PCRPi-W): a web server to chart hot spots in protein interfaces.
Segura Mora J1, Assi SA, Fernandez-Fuentes N.