Pandora 4.2 – Protein ANnotation Diagram ORiented Analysis

Pandora 4.2

:: DESCRIPTION

PANDORA is a web server which functions as a platform for the advanced biological analysis of sets of genes, proteins, or proteolytic peptides.

::DEVELOPER

The Sudarsky Center for Computational Biology – The Hebrew University of Jerusalem

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W84-9. doi: 10.1093/nar/gkq320. Epub 2010 May 5.
PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations.
Rappoport N1, Fromer M, Schweiger R, Linial M.

QuasiMotiFinder v4 – Protein Annotation Using a Search for Signature Like Patterns

QuasiMotiFinder v4

:: DESCRIPTION

QuasiMotiFinder is a server for the identification of signatures and signature-like patterns in protein sequences

::DEVELOPER

The Ben-Tal Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W255-61.
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns.
Gutman R, Berezin C, Wollman R, Rosenberg Y, Ben-Tal N.

APACE – Automated Protein Annotation by Coordinate Evolution

APACE

:: DESCRIPTION

APACE is a novel phylogenetic profile comparison (PPC) method that facilitates the automated characterization of proteins beyond their homology to other similar sequences.

::DEVELOPER

Stormo Lab in Department of Genetics, Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Proc IEEE Int Symp Bioinformatics Bioeng. 2010:99-105.
Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation.
Kwan AL, Dutcher SK, Stormo GD.