:: DESCRIPTION
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data.
Fimereli D, Detours V, Konopka T.
Nucleic Acids Res. 2013 Apr;41(7):e86. doi: 10.1093/nar/gkt094
:: DESCRIPTION
novoMiRank is a tool for ranking novel miRNAs that have been predicted from next-generation sequencing (NGS) data.
::DEVELOPER
Chair for clinical bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2015 Dec 3. pii: gkv1335.
Prioritizing and selecting likely novel miRNAs from NGS data.
Backes C, Meder B, Hart M, Ludwig N, Leidinger P, Vogel B, Galata V, Roth P, Menegatti J, Grässer F, Ruprecht K, Kahraman M, Grossmann T, Haas J, Meese E, Keller A.
:: DESCRIPTION
MetaCompare is a computational pipeline for prioritizing resistome risk by estimating the potential for ARGs to be disseminated into human pathogens from a given environmental sample based on metagenomic sequencing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Oh M, Pruden A, Chen C, Heath LS, Xia K, Zhang L.
MetaCompare: a computational pipeline for prioritizing environmental resistome risk.
FEMS Microbiol Ecol. 2018 Jul 1;94(7):fiy079. doi: 10.1093/femsec/fiy079. PMID: 29718191; PMCID: PMC5995210.
:: DESCRIPTION
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient. Given his/her genomic mutation information, iCAGES can accurately prioritize a list of candidate cancer driver genes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Dong C, Guo Y, Yang H, He Z, Liu X, Wang K.
iCAGES: integrated CAncer GEnome Score for comprehensively prioritizing driver genes in personal cancer genomes.
Genome Med. 2016 Dec 22;8(1):135. doi: 10.1186/s13073-016-0390-0. PMID: 28007024; PMCID: PMC5180414.
