Tag: pre-miRNA

Mirinho 1.0.0 – Prediction of pre-miRNAs

Mirinho1.0.0

:: DESCRIPTION

Mirinho is a flexible and efficient method for the prediction of pre-miRNAs. Its flexibility relies on the input type (both genomic and sRNA-seq data) and in its parameters that allows the predictions in both animal and plant species.

::DEVELOPER

ERABLE (European Research team in Algorithms and Biology, formaL and Experimental)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 Mirinho

:: MORE INFORMATION

Citation

Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data.
Higashi S, Fournier C, Gautier C, Gaspin C, Sagot MF.
BMC Bioinformatics. 2015 May 29;16(1):179. doi: 10.1186/s12859-015-0594-0.

MiRdup 1.4 – Prediction of the Localization of microRNAs within their pre-miRNA

MiRdup 1.4

:: DESCRIPTION

miRdup is a computational predictor for the identification of the most likely miRNA location within a given pre-miRNA or the validation of a candidate miRNA.

::DEVELOPER

Mathieu Blanchette’sComputational Genomics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 MiRdup

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Aug;41(15):7200-11. doi: 10.1093/nar/gkt466. Epub 2013 Jun 8.
Computational prediction of the localization of microRNAs within their pre-miRNA.
Leclercq M1, Diallo AB, Blanchette M.