:: DESCRIPTION
“PROPORES” is a novel toolkit for identifying pockets, cavities and channels of protein structures.
::DEVELOPER
Chair of Computational Biology at the Saarland University
:: SCREENSHOTS
n/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Proteins. 2011 Sep 26. doi: 10.1002/prot.23204. [Epub ahead of print]
Identifying continuous pores in protein structures with PROPORES by computational repositioning of gating residues.
Lee PH1, Helms V.
:: DESCRIPTION
Program MOLE is an universal toolkit for rapid and fully automated location and characterization of channels, tunnels and pores in molecular structures. The core of MOLE algorithm is a Dijsktra path search algorithm, which is applied to a Voronoi mesh. MOLE is a powerful software (overcomming some limitations of CAVER tool) for exploring large molecular channels, complex networks of channels and molecular dynamics trajectories (AMBER ascii traj and parm7 are supported) in which analysis of a large number of snapshots is required.
::DEVELOPER
Martin Petrek (NCBR), Michal Otyepka (FCH UPOL)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Structure. 2007 Nov;15(11):1357-63.
MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels.
Petrek M, Kosinová P, Koca J, Otyepka M.
:: DESCRIPTION
poRe (R_poRe) is a package for R that enables users to manipulate, organize, summarise and visualize MinION nanopore sequencing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
poRe: an R package for the visualization and analysis of nanopore sequencing data.
Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M.
Bioinformatics. 2014 Aug 29. pii: btu590.
