Migrate 4.4.3
:: DESCRIPTION
Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters.
It can use the following data types:
- Sequence data using Felsenstein’s 84 model with or without site rate variation,
- Single nucleotide polymorphism data (sequence-like data input, HAPMAP-like data input)
- Microsatellite data using a stepwise mutation model or a brownian motion mutation model (using the repeatlength input format or the fragment-length input format),
- Electrophoretic data using an ‘infinite’ allele model.
::DEVELOPER
Peter Beerli
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / MacOs / Linux / Unix
:: DOWNLOAD
Migrate-N
:: MORE INFORMATION
Citation
Population Genetic Inference With MIGRATE.
Beerli P, Mashayekhi S, Sadeghi M, Khodaei M, Shaw K.
Curr Protoc Bioinformatics. 2019 Dec;68(1):e87. doi: 10.1002/cpbi.87.