:: DESCRIPTION
OpenCFU is a free software that should facilitate (and render more reproducible) the enumeration of colony forming unit (CFU).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2013;8(2):e54072. doi: 10.1371/journal.pone.0054072. Epub 2013 Feb 15.
OpenCFU, a new free and open-source software to count cell colonies and other circular objects.
Geissmann Q.
:: DESCRIPTION
SQPR is a graphical interface software to allow the researcher to view and assess the quality of sequencing results using a series of program scripts developed to process data generated by automated sequencers.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Lazo, G.R., Tong, J., Miller, R., Hsia, C., Rausch, C., Kang, Y., and Anderson, O.D. 2001.
Software scripts for quality checking of high-throughput nucleic acid sequencers.
BioTechniques 30(6):1300-1305.
:: DESCRIPTION
Hybsweeper was developed to handle images of high-density gridding patterns which were matched to clones housed in microtiter dishes. As high-throughput methodologies contribute to large archives of stored clone resources, methods need to be available for convenient processing of hybridization information for the retrieval of the clones needed for research endeavors. A Java software package, Hybsweeper, was developed to select clone identities from autoradiographs which were generated through simple probing methods, overgo probe hybridizations, and isolation of unique clones from saturation hybridization.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gerard R. Lazo, Nancy Lui, Yong Q. Gu, Xiuying Kong, Devin Coleman-Derr, and Olin D. Anderson.
Hybsweeper: a resource for detecting high-density plate gridding coordinates
BioTechniques (2005) 39:320-324.
:: DESCRIPTION
SlideMap.pm is a Perl module used to create a row/column to plate/well map of a microarray slide. It does not as yet incorporate annotation data into the map, but simply creates the map object based on input parameters. The map is an ordered list of spots containing array_row, array_col, plate_alias, well. SlideMap currently supports 5 types of arrayers: IAS, MD, MD3, Lucidia, and Stanford. However, ‘generic’ arrayers can be used with this perl module. SlideMap provides methods for conversion of spots to wells and wells to spots.
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:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
