Raphael 1.0 – Determination of Periodicity in Protein Structures

Raphael 1.0

:: DESCRIPTION

RAPHAEL is a novel method for the detection of solenoids in protein structures. It reliably solves three problems of increasing difficulty: (1) recognition of solenoid domains, (2) determination of their periodicity and (3) assignment of insertions.

::DEVELOPER

The BioComputing UP lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Dec 15;28(24):3257-64. doi: 10.1093/bioinformatics/bts550. Epub 2012 Sep 8.
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.
Walsh I1, Sirocco FG, Minervini G, Di Domenico T, Ferrari C, Tosatto SC.

AVF-filter 2.4 – Find Noisy Datasets, Measure Periodicity of Gene Expression

AVF-filter 2.4

:: DESCRIPTION

AVF-filter is designed for the removal of noisy/low-variance expression profiles and non-periodic profiles (optional, for cell culture data).

::DEVELOPER

Dmitri Papatsenko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows

:: DOWNLOAD

AVF-filter

:: MORE INFORMATION

Citation

Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.