NovoHMM – hidden Markov model for de novo Peptide Sequencing

NovoHMM

:: DESCRIPTION

NovoHMM is a software for hidden Markov model for de novo peptide sequencing.

::DEVELOPER

Bernd Fischer

:: SCREENSHOTS

NovoHMM

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 NovoHMM

:: MORE INFORMATION

Citation

Anal Chem. 2005 Nov 15;77(22):7265-73.
NovoHMM: a hidden Markov model for de novo peptide sequencing.
Fischer B, Roth V, Roos F, Grossmann J, Baginsky S, Widmayer P, Gruissem W, Buhmann JM.

UniNovo 20130520 – Universal tool for de novo Peptide Sequencing

UniNovo 20130520

:: DESCRIPTION

UniNovo is a universal de novo peptide sequencing tool that works well for various types of spectra and spectral pairs (e.g., CID, ETD, HCD, CID/ETD, etc). The accuracy of de novo reconstructions generated by UniNovo is better than or comparable to PepNovo+ or PEAKS. Moreover, UniNovo also estimates the error rate of the reported reconstruction.

::DEVELOPER

CCMS The Center for Computational Mass Spectrometry

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 UniNovo

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Aug 15;29(16):1953-62. doi: 10.1093/bioinformatics/btt338. Epub 2013 Jun 12.
UniNovo: a universal tool for de novo peptide sequencing.
Jeong K1, Kim S, Pevzner PA.

MSNovo 5.0 – de novo Peptide Sequencing program for Tandem Mass Spectrometry

MSNovo 5.0

:: DESCRIPTION

MSNovo is a new software to peptide de novo sequencing, which has the following advanced features. (1) It works on data generated from both LCQ and LTQ mass spectrometers and interprets singly, doubly, and triply charged ions. (2) It integrates a new probabilistic scoring function with a mass array-based dynamic programming algorithm.

::DEVELOPER

Ting Chen

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 MSNovo

:: MORE INFORMATION

Citation:

Anal Chem. 2007 Jul 1;79(13):4870-8. Epub 2007 Jun 6.
MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry.
Mo L, Dutta D, Wan Y, Chen T.