RIPSeeker 1.26.0 – de novo RIP Peak Predictions based on HMM.

RIPSeeker 1.26.0

:: DESCRIPTION

RIPSeeker is a free open-source Bioconductor/R package for identifying protein-associated transcripts from RIP-seq experiments.

::DEVELOPER

Yue Li @ The Zhang Lab, University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Weindows/Linux/MacOsX
R package
BioConductor

:: DOWNLOAD

RIPSeeker

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Apr;41(8):e94. doi: 10.1093/nar/gkt142. Epub 2013 Feb 28.
RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments.
Li Y1, Zhao DY, Greenblatt JF, Zhang Z.

ChIPSeq Peak Finder – Find Peaks from ChIPSeq data

ChIPSeq Peak Finder

:: DESCRIPTION

ChIPSeqPeakFinder (ChIPSeq Peak Finder) is a tool to find peaks from ChIPSeq data generated from the Solexa / Illumina platform. Optionally, data from the peaks found can also be exported to simple textfile format for further usage.

:: DEVELOPER

Computational & Mathematical Biology Lab @ GIS