HelixPSO – Particle Swarm Optimizer for RNA Secondary Structure Prediction

HelixPSO

:: DESCRIPTION

HelixPSO  (Particle Swarm Optimizer)  is a multi swarm algorithm that searches the conformation space of an RNA sequence for low lying structures. Fitness is a combination of free energy and agreement with the centroid structure in the thermodynamic ensemble. HelixPSO has been used on sequences of up to 1500 nucleotides.

::DEVELOPER

Bioinformatics Leipzig

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 HelixPSO

:: MORE INFORMATION