Tag: PanGEA

PANGEA 1.0.2 – Pipeline Analysis for Next GEneration Amplicons

PANGEA 1.0.2

:: DESCRIPTION

PANGEA is a code useful for the analysis of 16S rRNA nucleotide sequences

::DEVELOPER

Austin Davis-Richardson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Perl

:: DOWNLOAD

 PANGEA

:: MORE INFORMATION

Citation

ISME J. 2010 Jul;4(7):852-61. doi: 10.1038/ismej.2010.16. Epub 2010 Feb 25.
PANGEA: pipeline for analysis of next generation amplicons.
Giongo A1, Crabb DB, Davis-Richardson AG, Chauliac D, Mobberley JM, Gano KA, Mukherjee N, Casella G, Roesch LF, Walts B, Riva A, King G, Triplett EW.

PanGEA 1.04 – The Comprehensive Gene Expression Analyser

PanGEA 1.04

:: DESCRIPTION

PanGEA allows to map EST’s to genes or whole genomes using algorithm which are especially adapted to next-generation sequencing technologies. The mapping results may be displayed as a gene-expression-profile or used for SNP identification. The mapped EST’s and the SNP’s can be interactively managed and manipulated, subsets may be specified and exported.

::DEVELOPER

Robert Kofler

:: SCREENSHOTS

PanGEA

:: REQUIREMENTS

  • Linux / WIndows / MacOsX

:: DOWNLOAD

 PanGEA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2009 May 14;10:143. doi: 10.1186/1471-2105-10-143.
PanGEA: identification of allele specific gene expression using the 454 technology.
Kofler R, Teixeira Torres T, Lelley T, Schlötterer C.