PaGE 5.1.6 – Patterns from Gene Expression

PaGE 5.1.6

:: DESCRIPTION

PaGE (Patterns from Gene Expression) is free downloadable software for microarray analisys. PaGE can be used to produce sets of differentially expressed genes with confidence measures attached.

::DEVELOPER

the Computational Biology and Informatics Laboratory (in the Center for Bioinformatics at the University of Pennsylvania)

:: SCREENSHOTS

:: REQUIREMENTS

Linux/ MacOsX / Windows
Perl / Java

:: DOWNLOAD

PaGE

:: MORE INFORMATION

Citation:

Grant G.R., Liu J., Stoeckert C.J.Jr. (2005)
A practical false discovery rate approach to identifying patterns of differential expression in microarray data,
Bioinformatics, Vol 21 no 11, 2684-2690.

PAGE – Phase-shifted Analysis of Gene Expression

PAGE

:: DESCRIPTION

PAGE (Phase-shifted Analysis of Gene Expression) is a Java-based software for phase-shifted analysis of gene expression developed along the lines of the original q-Clustering algorithm (Ji and Tan, 2005) to analyze gene expression from multiple biological conditions across dose and time series experiments. Grouping of gene expression patterns is performed in q-intervals of the measurements using phase-shifts to find clusters of genes which share trends of expression profiles within the dataset.

::DEVELOPER

Pierre R. Bushel, Ph.D.

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows /MacOsX
Java

:: DOWNLOAD

PAGE

:: MORE INFORMATION

Citation:

Bioinformatics. 2006 Feb 1;22(3):367-8. Epub 2005 Dec 1.
PAGE: phase-shifted analysis of gene expression.
Leung E, Bushel PR.