Tag: Orthology Assignment

eggNOG-mapper 2.0.1 – Fast Genome-wide Functional Annotation through Orthology Assignment

eggNOG-mapper 2.0.1

:: DESCRIPTION

eggNOG-mapper is a tool for functional annotation of large sets of sequences based on fast orthology assignments using precomputed clusters and phylogenies from the eggNOG database.

::DEVELOPER

Bork Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

eggNOG-mapper

:: MORE INFORMATION

Citation

Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper.
Jaime Huerta-Cepas, Kristoffer Forslund, Luis Pedro Coelho, Damian Szklarczyk, Lars Juhl Jensen, Christian von Mering & Peer Bork.
Mol Biol Evol (2017) doi: 10.1093/molbev/msx148.

phyloCOP – Greedy Phylogeny-Based Algorithm for Orthology Assignment

phyloCOP

:: DESCRIPTION

PhyloCOP (phylogeny-based Clusters of Orthologous Proteins) is a customizable program for the assignment of orthologous genes into clusters. PhyloCOP detects transitive orthologous relationships between highly diverse prokaryotic proteins and assigns them into orthologous clusters, simultaneously excluding paralogy. Orthology assignment is based on best BLAST (Basic Local Alignment Search Tool) protein sequence similarity hits between pairs of genomes.

::DEVELOPER

Computational Cell Biology,   Heinrich-Heine-Universität Düsseldorf

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows  / MacOsX
  • Perl

:: DOWNLOAD

 phyloCOP

:: MORE INFORMATION