MultiOrigin 1.0 – Exploring Hypotheses about the number of origins and the time of origin of a species founded by discrete events

MultiOrigin 1.0

:: DESCRIPTION

MultiOrigin explores hypotheses about the number of origins and time of origin of species that are founded from an ancestral species through discrete events (i.e. polyploid species). The program uses a population divergence coalescence model together with a rejection sampling algorithm.

::DEVELOPER

Jakobsson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/MacOsX/ Windows

:: DOWNLOAD

MultiOrigin

:: MORE INFORMATION

Citation

Jakobsson et al. (2006)
A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: Evidence from Nuclear DNA Markers
Mol. Biol. Evol. 23: 1217-1231,

GeoAssign 0.4.1 – Assignment of Origin using Genetic, Phenotypic and Geographic information

GeoAssign 0.4.1

:: DESCRIPTION

GeoAssign is a Web based program assigns test individuals according to their genotypes or metric traits to groups (e.g. country of origin, population of origin) which are defined by reference individuals. Thus, the user needs to upload one data file for the test individuals (“Test file”) and one data file for the reference individuals (“Reference file”). The assignment is done using a nearest neighbour approach.

::DEVELOPER

Bernd Degen

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Degen B, Blanc-Jolivet C, Stierand K, Gillet E.
A nearest neighbour approach by genetic distance to the assignment of individual trees to geographic origin.
Forensic Sci Int Genet. 2017 Mar;27:132-141. doi: 10.1016/j.fsigen.2016.12.011. Epub 2016 Dec 29. PMID: 28073087.

iROS-gPseKNC – Predict the Origin of Replication of the Genome

iROS-gPseKNC

:: DESCRIPTION

iROS-gPseKNC is a webserver of predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition

::DEVELOPER

Xiao Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Oncotarget. 2016 Jun 7;7(23):34180-9. doi: 10.18632/oncotarget.9057.
iROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition
Xuan Xiao 1 2 3, Han-Xiao Ye 1, Zi Liu 4, Jian-Hua Jia 1, Kuo-Chen Chou 5 3