:: DESCRIPTION
GeneDesign is a codon manipulation library. Its main purpose is to ease the design and assembly of synthetic DNA.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Design-A-Gene with GeneDesign.
Richardson SM, Liu S, Boeke JD, Bader JS.
Methods Mol Biol. 2012;852:235-47. doi: 10.1007/978-1-61779-564-0_18.
:: DESCRIPTION
BALBOA is an ORF (Open Reading Frame) annotation approach, in which classifiers are constructed from the class specific expression patterns discovered by bicluster analysis. Firstly a set of bicluster classifiers is build using a labelled training set from the annotated ORFs in the expression data. These biclusters are then used to classify an unlabelled ORF set i.e. the unannotated ORFs from the expression dataset.
::DEVELOPER
the Machine Learning Group (MLG)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2008 Sep 16;9 Suppl 2:S20.
Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data.
Bryan K, Cunningham P.
