ORFer 1.3.2.2

:: DESCRIPTION

ORFer (Open Reading Frame Retrieval) reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number.The open reading frame corresponding to the protein sequences is extracted from the XML and displayed. ORFer has a database interface that allows for storing the retrieved sequences in a local SQL database.

::DEVELOPER

Konrad Büssow and Steve Hoffmann

:: SCREENSHOTS

:: REQUIREMENTS

• Windows / Linux / MacOSX
• Java

:: DOWNLOAD

ORFer

:: MORE INFORMATION

Citation

Konrad Büssow , Steve Hoffmann and Volker Sievert
ORFer – retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
BMC Bioinformatics 2002, 3:40doi:10.1186/1471-2105-3-40