:: DESCRIPTION
ncRNAscout takes the genome sequence and any known ncRNA sequences and then determines which segments on the genome sequence are ncRNA sequences.
::DEVELOPER
:: SCREENSHOTS
n/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genomics Proteomics Bioinformatics. 2012 Apr;10(2):114-21. doi: 10.1016/j.gpb.2012.05.004. Epub 2012 Jun 9.
Searching for non-coding RNAs in genomic sequences using ncRNAscout.
Bao M1, Cervantes Cervantes M, Zhong L, Wang JT.
:: DESCRIPTION
LncRNA-ID is a new tool that calculates the coding potential of a transcript using a machine learning model (random forest) based on multiple features including sequence characteristics of putative open reading frames, translation scores based on ribosomal coverage, and conservation against characterized protein families.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
LncRNA-ID: Long non-coding RNA IDentification using balanced random forests.
Achawanantakun R, Chen J, Sun Y, Zhang Y.
Bioinformatics. 2015 Aug 26. pii: btv480.
:: DESCRIPTION
According to the concept of the K-nearest neighbor technique, a novel decision-making method, an improved K-nearest neighbor classifier (iKNN) which not only use the information of quantity but also similarity distance, is introduced to recognize ncRNAs from different organelle genomes.
::DEVELOPER
The Li’s Group of Theoretical Biophysics and Bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Using the Chou’s pseudo component to predict the ncRNA locations based on the improved K-nearest neighbor (iKNN) classifier.
In prepared.
