miRviewer – Multispecies microRNA Homologous Viewer

miRviewer

:: DESCRIPTION

microRNAviewer presents a global view of homologous miRNA genes in many species.

::DEVELOPER

miRviewer team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

BMC Res Notes. 2012 Feb 13;5:92. doi: 10.1186/1756-0500-5-92.
miRviewer: a multispecies microRNA homologous viewer.
Kiezun A1, Artzi S, Modai S, Volk N, Isakov O, Shomron N.

GibbsModule – Multispecies de novo Identification of Cis-regulatory Motifs and Modules

GibbsModule

:: DESCRIPTION

GibbsModule is a software for de novo detection of cis-regulatory motifs and modules in eukaryote genomes. GibbsModule models the coexpressed genes within one species as sharing a core cis-regulatory motif and each homologous gene group as sharing a homologous cis-regulatory module (CRM), characterized by a similar composition of motifs.

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 GibbsModule

:: MORE INFORMATION

Citation

Genome Res. 2008 Aug;18(8):1325-35. Epub 2008 May 15.
Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.
Xie D, Cai J, Chia NY, Ng HH, Zhong S.