Tag: Multiple Genome Comparison

VisCHAINER – Visualizing Multiple Genome Comparisons

VisCHAINER

:: DESCRIPTION

VisCHAINER is the interactive visualization component of the software system CoCoNUT. The current version of VisCHAINER plots the chains output by the program CHAINER . Each chain corresponds to a region of similarity among two or multiple genomes. Because these chains are multi-dimensional VisCHAINER displays projections in 2D plots.

::DEVELOPER

Asem Othman , Mohamed Ibrahim Abouelhoda

:: SCREENSHOTS

VisCHAINER

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Java

:: DOWNLOAD

 VisCHAINER

:: MORE INFORMATION

Citation

Mohamed I. Abouelhoda, Stefan Kurtz, Enno Ohlebusch
CoCoNUT: an efficient system for the comparison and analysis of genomes
BMC Bioinformatics, 9:476, 2008.

QOD 1.0.2 – Alternative Approach to Multiple Genome Comparison

QOD 1.0.2

:: DESCRIPTION

QOD implements an original approach to multiple genome comparison. It segments a target genome with respect to its local similarities with k other reference genomes, and classifies its genomic regions according to two criteria:

  1. being shared or unshared across all genomes,
  2. offering a unique or several alignment possibilities.

::DEVELOPER

Mancheron Alban, Uricaru Raluca, Rivals Eric

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX

:: DOWNLOAD

 QOD

:: MORE INFORMATION

Citation

“An Alternative Approach to Multiple Genome Comparison”
Mancheron A., Uricaru R., Rivals E.
Nucleic Acids Research 2011, vol. 39(15), p. e101.