Tag: mRNAs

PLEK 1.2 – Predictor of Long Non-coding RNAs and mRNAs based on K-mer Scheme

PLEK 1.2

:: DESCRIPTION

PLEK uses an improved computational pipeline based on k-mer and support vector machine (SVM) to distinguish long non-coding RNAs (lncRNAs) from messager RNAs (mRNAs).

::DEVELOPER

PLEK team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C/C++ compiler
  • Python

:: DOWNLOAD

 PLEK

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2014 Sep 19;15:311. doi: 10.1186/1471-2105-15-311.
PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.
Li A, Zhang J1, Zhou Z..

pirnaPre 1.0.0 – piRNA Targets on mRNAs in Mouse

pirnaPre 1.0.0

:: DESCRIPTION

pirnaPre is a SVM classifier based on a combination of Miwi CLIP-Seq derived features and position derived features to predict potential targets of piRNAs on mRNAs.

::DEVELOPER

pirnaPre team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 pirnaPre

:: MORE INFORMATION

Citation

Computational identification of piRNA targets on mouse mRNAs.
Yuan J, Zhang P, Cui Y, Wang J, Skogerbø G, Huang DW, Chen R, He S.
Bioinformatics. 2015 Dec 16. pii: btv729.