PNImodeler – Protein-Nucleic Acid Interaction Modeler

PNImodeler

:: DESCRIPTION

PNImodeler is a web application which predicts protein-binding nucleotide in DNA using sequence data.

::DEVELOPER

Biocomputing Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Genomics. 2015;16 Suppl 3:S6. doi: 10.1186/1471-2164-16-S3-S6. Epub 2015 Jan 29.
PNImodeler: web server for inferring protein-binding nucleotides from sequence data.
Im J, Tuvshinjargal N, Park B, Lee W, Huang DS, Han K.

JiffyNet – Jiffy (instant) Gene Network Modeler for newly Sequenced Species

JiffyNet

:: DESCRIPTION

JiffyNet specifically designed to instantly construct genome-scale protein networks based on associalogs (functional associations transferred from a template network by orthology) for a query species with only protein sequences provided.

::DEVELOPER

Network Biomedicine Laboratory at Yonsei University, Korea

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Eiru Kim, Hanhae Kim, Insuk Lee.
JiffyNet: a web-based instant protein network modeler for newly sequenced species,
Nucl. Acids Res. (1 July 2013) 41 (W1): W192-W197