TeraStitcher v1.10.18 – 3D Stitching tool designed for Teravoxel-sized microscopy images

TeraStitcher v1.10.18

:: DESCRIPTION

TeraStitcher is a free tool that enables the stitching of Teravoxel-sized tiled microscopy images even on workstations with relatively limited resources of memory (< 8 GB) and processing power. It exploits the knowledge of approximate tile positions and uses ad-hoc strategies and algorithms designed for such very large datasets. The produced images can be saved into a multiresolution representation to be efficiently retrieved and processed.

::DEVELOPER

TeraStitcher team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX

:: DOWNLOAD

 TeraStitcher

:: MORE INFORMATION

Citation:

BMC Bioinformatics 2012, 13:316
TeraStitcher – A Tool for Fast Automatic 3D-Stitching of Teravoxel-Sized Microscopy Images
Alessandro Bria and Giulio Iannello

FiloDetect – Detect & Quantify Filopodia in Single-cell Fluorescence Confocal Microscopy Images

FiloDetect

:: DESCRIPTION

FiloDetect is an image analysis program for detecting and quantifying filopodia in single-cell fluorescence confocal microscopy images.

::DEVELOPER

Perkins Lab at the OHRI

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux / MacOsX /Windows
  •  MatLab

:: DOWNLOAD

 FiloDetect

:: MORE INFORMATION

Citation

S. Nilufar, A. A. Morrow, J. M. Lee, T. J. Perkins
FiloDetect: Automatic Detection of Filopodia from Fluorescence Microscopy Images
BMC Syst Biol. 2013 Jul 23;7:66. doi: 10.1186/1752-0509-7-66.