Tag: Microarray Classification

tspair 1.50.0 – Top Scoring Pairs for Microarray Classification

tspair 1.50.0

:: DESCRIPTION

tspair ( Top Scoring Pair) is a pair of genes whose relative ranks can be used to classify arrays according to a binary phenotype.

::DEVELOPER

Jeffrey Leek

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • R

:: DOWNLOAD

 tspair

:: MORE INFORMATION

Citation

Bioinformatics. 2009 May 1;25(9):1203-4. doi: 10.1093/bioinformatics/btp126. Epub 2009 Mar 10.
The tspair package for finding top scoring pair classifiers in R.
Leek JT

StabPerf 0.5.4 – Reliable Gene Signatures for Microarray Classification

StabPerf 0.5.4

:: DESCRIPTION

StabPerf (STABle model selection by optimizing reliable classification PERFormance) constains several methods for analyzing gene expression data. The focus of the approach is to perform model selection based on stable gene signatures and reliable classification performance.

::DEVELOPER

Institute for Bioinformatics, Ludwig-Maximilians-Universität München

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • R package

:: DOWNLOAD

 StabPerf

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Oct 1;22(19):2356-63. Epub 2006 Jul 31.
Reliable gene signatures for microarray classification: assessment of stability and performance.
Davis CA, Gerick F, Hintermair V, Friedel CC, Fundel K, Küffner R, Zimmer R.