LncTar 1.0 – Predicting RNA targets of lncRNAs

LncTar 1.0

:: DESCRIPTION

LncTar is an efficient tool for predicting RNA targets of lncRNAs (Long noncoding RNAs)

::DEVELOPER

the Cui Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux /Windows
  • Perl

:: DOWNLOAD

 LncTar

:: MORE INFORMATION

Citation

Brief Bioinform. 2014 Dec 17. pii: bbu048. [Epub ahead of print]
LncTar: a tool for predicting the RNA targets of long noncoding RNAs.
Li J, Ma W, Zeng P, Wang J, Geng B, Yang J, Cui Q.

RefLnc – comprehensive Annotation for human long noncoding RNAs(lncRNAs)

RefLnc

:: DESCRIPTION

RefLnc is a comprehensive annotation for human long noncoding RNAs(lncRNAs).Each lncRNA in the atlas is characterized by a panorama of sequence, expression and trait association.

::DEVELOPER

Gao Lab, Peking University.

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • R

:: DOWNLOAD

RefLnc

:: MORE INFORMATION

Citation

Jiang S, Cheng SJ, Ren LC, Wang Q, Kang YJ, Ding Y, Hou M, Yang XX, Lin Y, Liang N, Gao G.
An expanded landscape of human long noncoding RNA.
Nucleic Acids Res. 2019 Sep 5;47(15):7842-7856. doi: 10.1093/nar/gkz621. PMID: 31350901; PMCID: PMC6735957.

AnnoLnc 2.1 – Annotate human lncRNAs

AnnoLnc 2.1

:: DESCRIPTION

AnnoLnc2 is a web server to provide on-the-fly analysis for novel human or mouse lncRNAs.

::DEVELOPER

Gao Lab, Peking University.

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

AnnoLnc

:: MORE INFORMATION

Citation

Ke L, Yang DC, Wang Y, Ding Y, Gao G.
AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse.
Nucleic Acids Res. 2020 Jul 2;48(W1):W230-W238. doi: 10.1093/nar/gkaa368. PMID: 32406920; PMCID: PMC7319567.

iLoc-LncRNA – Predict the subcellular locations of LncRNAs

iLoc-LncRNA

:: DESCRIPTION

iLoc-LncRNA is a sequence-based predictor to predict the subcellular locations of LncRNAs(Long non-coding RNAs).

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser / Windows

:: DOWNLOAD

iLoc-LncRNA

:: MORE INFORMATION

Citation

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC.
Su ZD, Huang Y, Zhang ZY, Zhao YW, Wang D, Chen W, Chou KC, Lin H.
Bioinformatics. 2018 Dec 15;34(24):4196-4204. doi: 10.1093/bioinformatics/bty508.