KNIME 3.1.2 – open-source data Analysis Platform for Next-generation Sequencing data analysis

KNIME 3.1.2

:: DESCRIPTION

KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis, and exploration platform. It has recently been updated with new functionality and workflows that open the door to performing next generation sequencing analysis using the KNIME framework.

::DEVELOPER

(bernd.jagla@pasteur.fr) Departement Génomes et Génétique, Institut Pasteur

:: SCREENSHOTS

KNIME

:: REQUIREMENTS

  • Linux/ Windows/MacOsX

:: DOWNLOAD

 KNIMEExtending KNIME

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Oct 15;27(20):2907-9. doi: 10.1093/bioinformatics/btr478. Epub 2011 Aug 27.
Extending KNIME for next-generation sequencing data analysis.
Jagla B, Wiswedel B, Coppée JY.

Knime4Bio – Custom Nodes for the Interpretation of Next Generation Sequencing data with KNIME

Knime4Bio

:: DESCRIPTION

Knime4Bio is a set of custom nodes for the KNIME (The Konstanz Information Miner) graphical workbench, for analysing NGS data without the requirement of programming skills.

::DEVELOPER

Knime4Bio team

:: SCREENSHOTS

Knime4Bio

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • KNIME

:: DOWNLOAD

 Knime4Bio

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Nov 15;27(22):3200-1. doi: 10.1093/bioinformatics/btr554. Epub 2011 Oct 7.
Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME.
Lindenbaum P, Le Scouarnec S, Portero V, Redon R.