:: DESCRIPTION
KAT is a suite of tools that generate, analyse and compare k-mer spectra produced from sequence files.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2017 Feb 15;33(4):574-576. doi: 10.1093/bioinformatics/btw663.
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
Mapleson D, Garcia Accinelli G, Kettleborough G, Wright J, Clavijo BJ.
:: DESCRIPTION
RUFUS is a software for k-mer based genomic variant detection
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.
::DEVELOPER
Pathogen Informatics, Wellcome Trust Sanger Institute
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data.
Epping L, van Tonder AJ, Gladstone RA, The Global Pneumococcal Sequencing Consortium, Bentley SD, Page AJ, Keane JA.
Microb Genom. 2018 Jul;4(7). doi: 10.1099/mgen.0.000186. Epub 2018 Jun 15.
:: DESCRIPTION
CoMeta is a tool used to assigns a query read (DNA fragment) from metagenomic sample into one of the groups (the most common the taxon).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2015 Apr 17;10(4):e0121453. doi: 10.1371/journal.pone.0121453. eCollection 2015.
CoMeta: classification of metagenomes using k-mers.
Kawulok J, Deorowicz S
