Tag: Interoperability

MOBY 1.16 / BioMoby – Interoperability between Biological Data Hosts and Analytical Services

MOBY 1.16 / BioMoby

:: DESCRIPTION

MOBY (Model Organism Bring Your) system defines an ontology-based messaging standard through which a client will be able to automatically discover and interact with task-appropriate biological data and analytical service providers, without requiring manual manipulation of data formats as data flows from one provider to the next. It aimed to standardize methodologies to facilitate information exchange and access to analytical resources, using a consensus driven approach.

::DEVELOPER

The BioMoby Consortium

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Perl

:: DOWNLOAD

 MOBY

:: MORE INFORMATION

Citation

The BioMoby Consortium (2008)
Interoperability with Moby 1.0 — It’s better than sharing your toothbrush!
Briefings in Bioinformatics, 9 (3), pp. 220-231.

BioC 1.1 – A Minimalist Approach to Interoperability for Biomedical Text Processing

BioC 1.1

:: DESCRIPTION

BioC is a simple XML format to share text documents and annotations. It allows a large number of different annotations to be represented. We provide simple code to hold this data, read it and write it back to XML files, and perform some sample processing.

::DEVELOPER

BioC Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java / C++

:: DOWNLOAD

 BioC 

:: MORE INFORMATION

Citation

Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013.
BioC: a minimalist approach to interoperability for biomedical text processing.
Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.