CoRegNet 1.30.0 – Reconstruction and Integrated Analysis of Co-regulatory Networks

CoRegNet 1.30.0

:: DESCRIPTION

COREGNET is an R/Bioconductor package to analyze large-scale transcriptomic data by highlighting sets of co-regulators.

::DEVELOPER

Remy Nicolle <remy.c.nicolle at gmail.com>,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 COREGNET

:: MORE INFORMATION

Citation

COREGNET: reconstruction and integrated analysis of co-regulatory networks.
Nicolle R, Radvanyi F, Elati M.
Bioinformatics. 2015 May 14. pii: btv305.

SIMBA – Organization of the Yeast Molecular Network by Integrated Analysis of Genome-wide Data

SIMBA

:: DESCRIPTION

The SIMBA yeast site allows interactive exploration of a large scale compendium of data from diverse high throughput experiments. You can explore the behavior of your favorite gene or sets of genes, compare the activity of various functional modules in different experimental conditions or test the relations between gene expression programs, protein interactions and transcription factor binding profiles.

::DEVELOPER

Ron Shamir’s lab

:: SCREENSHOTS

::REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 SIMBA

:: MORE INFORMATION

InCroMAP 1.5 – Integrated Analysis of Cross-platform MicroArray and Pathway data

InCroMAP 1.5

:: DESCRIPTION

InCroMAP is a powerful tool for pathway-based analysis or visualization of heterogeneous cross-platform microarray datasets (mRNA, miRNA, DNA methylation and protein).

::DEVELOPER

InCroMAP TEam

:: SCREENSHOTS

InCroMAP

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java

:: DOWNLOAD

 InCroMAP

:: MORE INFORMATION

Citation:

InCroMAP: integrated analysis of cross-platform microarray and pathway data.
Wrzodek C, Eichner J, Büchel F, Zell A.
Bioinformatics. 2013 Jan 16.