Tag: Initiation

TIPR – Transcription Initiation Pattern Recognition on a Genome Scale

TIPR

:: DESCRIPTION

TIPR (Transcription Initiation Pattern Recognizer) is a sequence-based machine learning model that identifies TSSs with high accuracy and resolution for multiple spatial distribution patterns along the genome, including broadly distributed TSS patterns that have previously been difficult to characterize.

::DEVELOPER

Megraw Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 TIPR

:: MORE INFORMATION

Citation

TIPR: transcription initiation pattern recognition on a genome scale.
Morton T, Wong WK, Megraw M.
Bioinformatics. 2015 Aug 8. pii: btv464.

Dragon Desert Masker -Transcription Initiation Desert Identification

Dragon Desert Masker

:: DESCRIPTION

Dragon Desert Masker (DDM) is a tool that can with a very high sensitivity demarcate those genomic regions that are unlikely to promote the initiation of transcription.

::DEVELOPER

Computational Bioscience Research Center ,  King Abdullah University of Science and Technology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 No

:: MORE INFORMATION

Citation

Schaefer U, Kodzius R, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bajic VB.
High sensitivity TSS prediction: estimates of locations where TSS cannot occur.
PLoS One. 2010 Nov 15;5(11):e13934.