Tag: Infection

EstMoi 1.03 – Estimating Multiplicity of Infection using Parasite Deep Sequencing data

EstMoi 1.03

:: DESCRIPTION

estMOI is a per-based software developed to estimate Multiplicity of Infection (MOI) in parasite genomic sequence data. It is primarily developed to address the limitations of current laboratory (PCR) based estimates of multiplicity using high throughput sequence data.

::DEVELOPER

PathogenSeq

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 EstMoi

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 1;30(9):1292-4. doi: 10.1093/bioinformatics/btu005. Epub 2014 Jan 17.
estMOI: estimating multiplicity of infection using parasite deep sequencing data.
Assefa SA1, Preston MD, Campino S, Ocholla H, Sutherland CJ, Clark TG.

SPMM – Estimating Infection Duration of Multi-variant HIV-1 Infections

SPMM

:: DESCRIPTION

SPMM (Shifted Poisson Mixture Model) estimates the infection duration of a single variant or multi-variant HIV infections based on the characteristics of HIV transmission and early evolution.

::DEVELOPER

LEE RESEARCH GROUP

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

SPMM: estimating infection duration of multi-variant HIV-1 infections.
Love TM, Park SY, Giorgi EE, Mack WJ, Perelson AS, Lee HY.
Bioinformatics. 2015 Dec 31. pii: btv749.