IMOD 4.9.12 – Tomographic 3D Reconstruction & Modeling

IMOD 4.9.12

:: DESCRIPTION

IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. The package contains tools for assembling and aligning data within multiple types and sizes of image stacks, viewing 3-D data from any orientation, and modeling and display of the image files.

::DEVELOPER

The Boulder Lab for 3D Electron Microscopy

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

IMOD ; source code

:: MORE INFORMATION

The citation is: Kremer J.R., D.N. Mastronarde and J.R. McIntosh (1996) Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116:71-76. For tomographic reconstruction, see also: Mastronarde, D. N. (1997) Dual-axis tomography: an approach with alignment methods that preserve resolution. J. Struct. Biol. 120:343-352.

iMODFIT 1.51 – Fitting of Atomic Structures into EM maps based on iMOD

iMODFIT 1.51

:: DESCRIPTION

iMODFIT is an efficient tool for flexible fitting of atomic structures into EM maps based on Normal Mode Analysis in internal Coordinates.

::DEVELOPER

The Structural Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 iMODFIT

:: MORE INFORMATION

Citation

J Struct Biol. 2013 Aug 30. pii: S1047-8477(13)00216-5. doi: 10.1016/j.jsb.2013.08.010.
iMODFIT: Efficient and robust flexible fitting based on vibrational analysis in internal coordinates.
Lopéz-Blanco JR, Chacón P.

iMOD 1.04 – Multipurpose Normal Mode Analysis in Internal Coordinates

iMOD 1.04

:: DESCRIPTION

iMOD is an versatile toolkit to perform Normal Mode Analysis (NMA) in internal coordinates (IC) on both protein and nucleic acid atomic structures. Vibrational analysis, motion animations, morphing trajectories and Monte-Carlo simulations can be easily carried out at different scales of resolution using this toolkit.

::DEVELOPER

The Structural Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX

:: DOWNLOAD

 iMOD

:: MORE INFORMATION

Citation

José Ramón Lopéz-Blanco, José Ignacio Garzón and Pablo Chacón.
iMod: multipurpose normal mode analysis in internal coordinates.
Bioinformatics (2011) 27 (20): 2843-2850