CRUSH – CoReceptor USage prediction for HIV-1

CRUSH

:: DESCRIPTION

CRUSH is an SVM model for the prediction of HIV-1 coreceptor usage based on the amino acid sequence of the V3-loop of envelope glycoprotein gp120.

::DEVELOPER

the Multi-scale Systems Engineering Laboratory (MSEL)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism.
Kieslich CA, Tamamis P, Guzman YA, Onel M, Floudas CA.
PLoS One. 2016 Feb 9;11(2):e0148974. doi: 10.1371/journal.pone.0148974.

:: DESCRIPTION

Geno2pheno is a web server for the prediction of HIV phenotypic drug resistance and coreceptor usage from genotype.

::DEVELOPER

the Computational Biology Group (CBG)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

:: MORE INFORMATION

Citation

Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes.
Beerenwinkel N, Däumer M, Oette M, Korn K, Hoffmann D, Kaiser R, Lengauer T, Selbig J, Walter H.
Nucleic Acids Res. 2003 Jul 1;31(13):3850-5.