HiNT v2.2.7 – Hi-C for Copy Number Variation and Translocation Detection

HiNT v2.2.7

:: DESCRIPTION

HiNT is a computational method to detect CNVs and Translocations from Hi-C data.

::DEVELOPER

Peter Park’s lab at CBMI, Harvard Medical School

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

HiNT

:: MORE INFORMATION

Citation

Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson GM, Walsh JM, Alver BH, Park PJ.
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.
Genome Biol. 2020 Mar 23;21(1):73. doi: 10.1186/s13059-020-01986-5. PMID: 32293513; PMCID: PMC7087379.

:: DESCRIPTION

HINT integrates both DNase I hypersensitivity and histone modifications for the detection of open chromatin regions and active binding sites.

::DEVELOPER

IZKF Computational Biology and Bioinformatics Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

HINT

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 Nov 15;30(22):3143-51. doi: 10.1093/bioinformatics/btu519. Epub 2014 Aug 1.
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications.
Gusmao EG, Dieterich C, Zenke M, Costa IG