Tag: Helix-Helix Contact

RHYTHM 0.3 – Knowledge-based Prediction of Helix-helix Contacts

RHYTHM 0.3

:: DESCRIPTION

RHYTHM is a web server that predicts buried versus exposed residues of helical membrane proteins.

::DEVELOPER

Institute of Medical Physics and Biophysics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W575-80. doi: 10.1093/nar/gkp418.
RHYTHM–a server to predict the orientation of transmembrane helices in channels and membrane-coils.
Rose A1, Lorenzen S, Goede A, Gruening B, Hildebrand PW.

TMhhcp – Transmembrane Helix-Helix Contact Predictor

TMhhcp

:: DESCRIPTION

TMhhcp is developed to predict residue-residue contacts in alpha-helix transmembrane proteins. The predicted contacts could be further used to predict helix-helix interactions between helices.

::DEVELOPER

Ziding Zhang’s Lab, China Agricultural University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser / Linux

:: DOWNLOAD

TMhhcp

:: MORE INFORMATION

Citation

PLoS One. 2011;6(10):e26767. doi: 10.1371/journal.pone.0026767. Epub 2011 Oct 28.
Predicting residue-residue contacts and helix-helix interactions in transmembrane proteins using an integrative feature-based random forest approach.
Wang XF1, Chen Z, Wang C, Yan RX, Zhang Z, Song J.