KymoRod v0.12.0 – Matlab Graphical Interface for the Study of Hypocotyl Growth

KymoRod v0.12.0

:: DESCRIPTION

KymoRod is a method for automated kinematic analysis of rod-shaped plant organs.

::DEVELOPER

IJPB Modeling and digital imaging lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MatLab

:: DOWNLOAD

 KymoRod

:: MORE INFORMATION

Citation

KymoRod: A method for automated kinematic analysis of rod-shaped plant organs.
Bastien R, Legland D, Martin M, Fregosi L, Peaucelle A, Douady S, Moulia B, Höfte H.
Plant J. 2016 Jun 29. doi: 10.1111/tpj.13255.

MetaReg – Graphical Interface for Modeling and Evaluation of Biological Systems

MetaReg.

:: DESCRIPTION

MetaReg is a Java application aimed to provide the biologist with an intuitive graphical interface for both definition and analysis of system models. The application makes it possible to navigate the model network and compare its predicted and observed behavior.

::DEVELOPER

Ron Shamir’s lab

:: SCREENSHOTS

::REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 MetaReg

:: MORE INFORMATION

Citation

I. Gat-Viks and R. Shamir.
MetaReg application: a graphical interface for modeling and evaluation of biological systems.
Genome Biology (2008) Vol. 9 No. R1

raxmlGUI 2.0.0b2 – A new Graphical Interface for RAxML

raxmlGUI 2.0.0b2

:: DESCRIPTION

raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood.

::DEVELOPER

Antonelli Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • RAxML

:: DOWNLOAD

raxmlGUI

:: MORE INFORMATION

Citation

Edler, D., Klein, J., Antonelli, A., and Silvestro, D. 2019.
raxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML.
bioRxiv, doi: https://doi.org/10.1101/800912